August 9th 2018: We updated the server to version 1.4.0. (Changelog)

Results for example run

Discovered seeds

You can select up to 4 seeds for higher-order refinement.

Select All
Selected Motifs IUPAC PWM reverse Comp. motif AvRec % occurrence Download
SSGATGASTCA <bammmotif.utils.meme_reader.Meme <bammmotif.utils.meme_reader.Meme 0.935 0.981
CGSSSSCG <bammmotif.utils.meme_reader.Meme <bammmotif.utils.meme_reader.Meme 0.716 0.151
TGAYGTCA <bammmotif.utils.meme_reader.Meme <bammmotif.utils.meme_reader.Meme 0.945 0.055

General settings

Job id: 00000000-0000-0000-0000-000000000000
Input sequences: ExampleData.fasta
Search on both strands: True
Background Sequences: not set
Background Model Order: 2

Seeding stage

Pattern Length: 8
Z-Score Threshold: 10.0
Count Threshold: 5
IUPAC Optimization Score: MUTUAL_INFO
Skip EM: False